Review
Published
Emerging tools in plant genome editing
Shilpi Sharma · Naveen Kumar Saroha · Abhilasha Sehrawat · Guiliang Tang · Deepali Singh · Sachin Teotia
Frontiers in Genome Editing
doi 10.3389/fgeed.2025.1588089
Library
Articles
Every article on Frontiers is peer reviewed, permanently archived and free to read.
Showing 350 articles
Original Research
Published
Development of efficient targeted insertion mediated by CRISPR-Cas12a and homology-directed repair in maize
Brenden Barco · Shujie Dong · Yuki Matsuba · Ashley Crook · Ruiji Xu · Yingxiao Zhang · Chengjin Zhang · Ryan Carlin · Kevin Potter · Stephen B. Rigoulot · Jeongmoo Park · Erin M. Seaberry · Allison Parrish · Sivamani Elumalai · Sam Nalapalli · Craig Schuller · Anna Prairie · Anna Mangum · Kangfeng Mei · Hao Wu · Melissa Murray · Kristin Setliff · Francine Johnson · Dawn McNamara · Ling Zhu · Mark Rose · Weining Gu · Hao Hu · Yuanji Zhang · Yaping Jiang · Wenling Wang · Guozhu Tang · Lizhao Geng · Jianping Xu · Wan Shi · Jason Nichols · Tim Kelliher · Liang Shi · Ian Jepson · Qiudeng Que
Frontiers in Genome Editing
doi 10.3389/fgeed.2025.1713347
Original Research
Published
A computational approach for prediction of exons using static encoding methods, digital filter and windowing technique
Shaik Benarjee · Vaegae Naveen Kumar
Frontiers in Signal Processing
doi 10.3389/frsip.2025.1679555
Original Research
Published
Cerebellar related social and motor behavior in Red Junglefowl selected for high or low fear of humans
Johanna Gjøen · Per Jensen
Frontiers in Ethology
doi 10.3389/fetho.2025.1699920
Original Research
Published
Comprehensive genomic profiling for homologous recombination deficiency guides PARP inhibitor therapy recommendations in ovarian cancer
Alp Inci · Isabell Witzel · Holger Moch · Sepehr Rahmani-Khajouei · Martin Zoche · Eleftherios Pierre Samartzis
Pathology and Oncology Research
doi 10.3389/pore.2025.1612266
Original Research
Published
Genomic dynamics of clinical Plasmodium vivax: comparative genomic hybridization in severe malaria cases
Sampreeti Tahbildar · Pon Arunachalam Boopathi · Sanjay Kumar Kochar · Dhanpat Kumar Kochar · Mohamed Aiyaz · Raja C. Mugasimangalam · Sudha N. Rao · Ashis Das
Frontiers in Malaria
doi 10.3389/fmala.2025.1667330
Bacteriology
Published
Genomic and proteomic identification of Aeromonas isolates from diverse sources: comparative performance of WGS and MALDI-TOF MS in species-level resolution
Thais Vieira · Gisele Lozano Costa · Amanda Yaeko Yamada · Amanda Maria de Jesus Bertani · Marta Ines Cazentini Medeiros · Luisa Zanolli Moreno · Andrea Micke Moreno · Christiane Asturiano Ristori Costa · Karoline Rodrigues Campos · Marlon Benedito · Claudio Tavares Sacchi · Carlos Henrique Camargo · Monique Ribeiro Tiba
Frontiers in Bacteriology
doi 10.3389/fbrio.2025.1708292
Pathology and Oncology Archive
Published
Case Report: From teratoma to adenocarcinoma: molecular insights into somatic-type malignancy in testicular germ cell tumors - two case reports and review of the literature
Tímea Rozsvai · Boglárka Pósfai · László Torday · Emőke Borzási · György Lázár · Judit Oláh · Bence Radics · István Előd Király · István Papos · Márton Balázsfi · Zsombor Melegh · Levente Kuthi · Anikó Maráz
Pathology and Oncology Research
doi 10.3389/pore.2025.1612227
Protistology
Published
Integrative taxonomy, whole organelle genomes and endosymbiosis in Rhopalodia sterrenburgii Krammer
Aimee Caye G. Chang · Mailor W. W. Amaral · Kyle G. Keepers · Megan Greenwood · Jingchun Li · Sarah E. Hamsher · Scott R. Miller · J. Patrick Kociolek
Frontiers in Eukaryotic Microbiology
doi 10.3389/frpro.2025.1663791
Impact Journals
Published
Precision cardiovascular medicine: shifting the innovation paradigm
Masanori Aikawa · Abhijeet R. Sonawane · Sarvesh Chelvanambi · Takaharu Asano · Arda Halu · Joan T. Matamalas · Sasha A. Singh · Shizuka Uchida · Elena Aikawa · Alex Arenas · Jean-Luc Balligand · Chiara Giannarelli · Calum A. MacRae · Neil V. Morgan · Cécile Oury · Hendrik Tevaearai Stahel · Joseph Loscalzo
Frontiers in Science
doi 10.3389/fsci.2025.1474469
Malaria
Published
Molecular polymorphism of Plasmodium vivax Duffy binding protein domain II from Nicaragua, and global diversity patterns
René Ortega-Monroy · Hugo A. Tomasini-Ovilla · Frida Santillan-Valenzuela · Alberto Montoya · Lilia Gonzalez-Ceron
Frontiers in Malaria
doi 10.3389/fmala.2025.1620450
Quantum Science and Technology
Published
The promise of quantum computing for population genetics and molecular ecology
Andrew A. Davinack
Frontiers in Quantum Science and Technology
doi 10.3389/frqst.2025.1657832
Plant Physiology
Published
Harnessing photosynthetic and morpho-physiological traits for drought-resilient soybean: integrating field phenotyping and predictive approaches
Harmeet Singh-Bakala · Francia Ravelombola · Cheryl Adeva · Maiara Oliveira · Ru Zhang · Jessica Argenta · Grover Shannon · Feng Lin
Frontiers in Plant Physiology
doi 10.3389/fphgy.2025.1591146
Parasitology
Published
Down-regulation of colon mucin production induced by Eimeria pragensis infection in mice
Yulia Dwi Setia · Mio Kokubo-Tanaka · Ryusei Tanaka · Akemi Yoshida · Eiji Nagayasu · Parnian Ahmadi · Ayako Yoshida · Haruhiko Maruyama
Frontiers in Parasitology
doi 10.3389/fpara.2025.1621486
Bacteriology
Published
Helicobacter pylori genetic landscape in Northeast India and its impact in peptic ulcer disease and gastric cancer
Anisha Sarma · Devyashree Medhi · Mridul Kumar Sarma · Lahari Saikia · Bikash Narayan Choudhury · Mallika Bhattacharya · Vaishali Sarma
Frontiers in Bacteriology
doi 10.3389/fbrio.2025.1589230
Bee Science
Published
Chromosome evolution in bees
Robin E. Owen
Frontiers in Bee Science
doi 10.3389/frbee.2025.1395037
Epigenetics and Epigenomics
Published
Hansemann’s anaplastic theory of cancer after 135 years
Steven Henikoff · Kami Ahmad
Frontiers in Epigenetics and Epigenomics
doi 10.3389/freae.2025.1607433
RNA Research
Published
Identification of long noncoding RNAs (lncRNAs) and co-transcriptional analysis of mRNAs and lncRNAs in transcriptomes of Anopheles gambiae
Jiannong Xu · Kai Hu · Michelle M. Riehle · Vedbar S. Khadka
Frontiers in RNA Research
doi 10.3389/frnar.2025.1555885
Cancer Control and Society
Published
Examining barriers and facilitators to implementing evidence-based genetic risk-stratified breast cancer screening in primary care
Yue Guan · Haley Barge · Cam Escoffery · Michele Cellai · Susana Alfonso · Theodore M. Johnson
Frontiers in Cancer Control and Society
doi 10.3389/fcacs.2025.1521486
Tuberculosis
Published
Predicting fitness in Mycobacterium tuberculosis with transcriptional regulatory network-informed interpretable machine learning
Ethan Bustad · Edson Petry · Oliver Gu · Braden T. Griebel · Tige R. Rustad · David R. Sherman · Jason H. Yang · Shuyi Ma
Frontiers in Tuberculosis
doi 10.3389/ftubr.2025.1500899
Fish Science
Published
Correlating environmental DNA and hydroacoustic estimates of biomass and abundance to monitor the globally Endangered mulloway (Argyrosomus japonicus)
Meaghan L. Rourke · Matt K. Broadhurst · Ashley M. Fowler · Julian M. Hughes · Joseph D. DiBattista · Stefan Sawynok · Elise M. Furlan
Frontiers in Fish Science
doi 10.3389/frish.2025.1547935
Freshwater Science
Published
Genetics of wild, whirling disease resistant rainbow trout populations in Colorado
Brian W. Avila · Eric R. Fetherman · Dana L. Winkelman · Melinda R. Baerwald
Frontiers in Freshwater Science
doi 10.3389/ffwsc.2025.1500903
Epigenetics and Epigenomics
Published
Roles for epigenetics in wood formation and stress response intrees–from basic biology to forest management
Andrew Groover
Frontiers in Epigenetics and Epigenomics
doi 10.3389/freae.2025.1476499
Synthetic Biology
Published
Assessing changes to the root biofilm microbial community on an engineered floating wetland upon exposure to a controlled diluted bitumen spill
Madeline J. Stanley · Lisa Peters · Aidan Guttormson · Julien Tremblay · Jessica Wasserscheid · Lauren Timlick · Charles W. Greer · José Luis Rodríguez Gil · Thor Halldorson · Sonya Havens · Richard Grosshans · Elliott Taylor · Gregg Tomy · David B. Levin · Vince P. Palace
Frontiers in Synthetic Biology
doi 10.3389/fsybi.2025.1517337
Malaria
Published
Allelic variations in putative antimalarial drug resistance and vaccine candidate genes among Plasmodium vivax reference genomes
Suman Tamang · Aditi Arya · Vineeta Singh
Frontiers in Malaria
doi 10.3389/fmala.2025.1530088
Fish Science
Published
How genomic and environmental relationships shape phenotypic plasticity in brook charr Salvelinus fontinalis: an historical review
Céline Audet · Dany Garant · Amélie Crespel · Marie Vagner
Frontiers in Fish Science
doi 10.3389/frish.2025.1525181
High Performance Computing
Published
Hyperspectral segmentation of plants in fabricated ecosystems
Petrus H. Zwart · Peter Andeer · Trent R. Northen
Frontiers in High Performance Computing
doi 10.3389/fhpcp.2025.1547340
Epigenetics and Epigenomics
Published
Editorial: Current insights in Epigenetics and Epigenomics
Steven Henikoff · Sharon Y. R. Dent · Raul Mostoslavsky · Ting Wang · Luca Comai
Frontiers in Epigenetics and Epigenomics
doi 10.3389/freae.2025.1566501
Epigenetics and Epigenomics
Published
Editorial: Epigenetics and genomic causality in development and chromatin research
Ellen V. Rothenberg · Ute Deichmann
Frontiers in Epigenetics and Epigenomics
doi 10.3389/freae.2025.1564074
Tuberculosis
Published
Implications of serological, genomic, and epidemiological insights into Mycobacterium tuberculosis mixed infection in a human-managed African elephant (Loxodonta africana)
Giovanni Ghielmetti · Tanya J. Kerr · Johannes Loubser · Jennie Hewlett · Anzaan Dippenaar · Andre G. Loxton · Robin M. Warren · Wynand J. Goosen · Michele A. Miller
Frontiers in Tuberculosis
doi 10.3389/ftubr.2024.1484394
Synthetic Biology
Published
Reduction of antimicrobial resistance genes in wastewater through phytoremediation
Kenton McCorquodale-Bauer · Daniel Flores Orozco · Richard Grosshans · Francis Zvomuya · Nazim Cicek
Frontiers in Synthetic Biology
doi 10.3389/fsybi.2024.1513580
Bacteriology
Published
Genomic characterization of Pantoea dispersa A003 isolated from a clinical patient
Licheng Wang · Xiaoxia Wang · Shaojin Chen · Shan Zhong · Lixia Xu · Xiong Zhu · Lingzhi Dong
Frontiers in Bacteriology
doi 10.3389/fbrio.2024.1445804
Freshwater Science
Published
New perspectives on metagenomic analysis for pathogen monitoring in sustainable freshwater aquaculture production: a systematic review
Daralyns Borges Macedo · Thais Mayara Castro dos Anjos · Edian Franklin Franco De Los Santos · Marília Danyelle Nunes Rodrigues · Oscar Victor Cardenas Alegria · Rommel Thiago Jucá Ramos
Frontiers in Freshwater Science
doi 10.3389/ffwsc.2024.1459233
Epigenetics and Epigenomics
Published
Blood DNA methylation of CRF and its association with amygdala volume and mood in Cushing’s syndrome
Richard S. Lee · Alicia Santos · Henri Garrison-Desany · Anna Aulinas · Jenny L. Carey · Yolanda Vives-Gilabert · Olivia H. Cox · Gabriel Cuilan · Susan M. Webb · Eugenia Resmini
Frontiers in Epigenetics and Epigenomics
doi 10.3389/freae.2024.1435634
RNA Research
Published
The expanding role of cap-adjacent modifications in animals
Eleanor Bellows · Rupert G. Fray · Helen M. Knight · Nathan Archer
Frontiers in RNA Research
doi 10.3389/frnar.2024.1485307
Epigenetics and Epigenomics
Published
Regulation of developmentally controlled enhancer activity by extrinsic signals in normal and malignant cells: AP-1 at the centre
Alexander Maytum · Nadine Obier · Pierre Cauchy · Constanze Bonifer
Frontiers in Epigenetics and Epigenomics
doi 10.3389/freae.2024.1465958
Geochemistry
Published
Biogeochemistry of the rare sulfidic glaciovolcanic cave system on Mount Meager, British Columbia, Canada
Jared J. Clance · Jacob M. C. Shaffer · Morgan L. Cable · Christian Stenner · Glyn Williams-Jones · Anna Szynkiewicz · Michael Paton · Kathleen Graham · Olivia Vinnes · Jill A. Mikucki
Frontiers in Geochemistry
doi 10.3389/fgeoc.2024.1410338
Arachnid Science
Published
A roadmap to the enzymes from spider venom: biochemical ecology, molecular diversity, and value for the bioeconomy
Josephine Dresler · Ignazio Avella · Maik Damm · Ludwig Dersch · Jonas Krämer · Andreas Vilcinskas · Tim Lüddecke
Frontiers in Arachnid Science
doi 10.3389/frchs.2024.1445500
Epigenetics and Epigenomics
Published
A hypothetical model: Chromatin remodelers couple with acetyltransferases to trigger the elongation of RNA polymerase II (pol II)
Gongyi Zhang
Frontiers in Epigenetics and Epigenomics
doi 10.3389/freae.2024.1439973
Industrial Microbiology
Published
Tradition unveiled: a comprehensive review of microbiological studies on Portuguese traditional cheeses, merging conventional and OMICs analyses
Susana Serrano · Susana Morais · Teresa Semedo-Lemsaddek
Frontiers in Industrial Microbiology
doi 10.3389/finmi.2024.1420042
Epigenetics and Epigenomics
Published
Transcription factor network dynamics during the commitment to oncogene-induced senescence
Themistoklis Vasilopoulos · Ricardo Iván Martínez-Zamudio
Frontiers in Epigenetics and Epigenomics
doi 10.3389/freae.2024.1423454
Analytical Science
Published
Simultaneous determination of small molecules and proteins in wastewater-based epidemiology
Yolanda Picó · Antoni Ginebreda · Montserrat Carrascal · Joaquin Abian · Damià Barceló
Frontiers in Analytical Science
doi 10.3389/frans.2024.1367448
RNA Research
Published
Long non-coding RNAs: emerging functional players in the pathobiology and progression of myeloid leukemia
Sangeeta Dutta · Vijay Suresh Akhade · Subhendu Roy Choudhury · Manchanahalli Rangaswamy Satyanarayana Rao
Frontiers in RNA Research
doi 10.3389/frnar.2024.1334464
Protistology
Published
Nuclear genomes of dinoflagellates reveal evolutionarily conserved pattern of RNA editing relative to stress response
Yibi Chen · Katherine E. Dougan · Debashish Bhattacharya · Cheong Xin Chan
Frontiers in Eukaryotic Microbiology
doi 10.3389/frpro.2024.1320917
Protistology
Published
Contaminant or goldmine? In silico assessment of Symbiodiniaceae community using coral hologenomes
Hisatake Ishida · Cynthia Riginos · Cheong Xin Chan
Frontiers in Eukaryotic Microbiology
doi 10.3389/frpro.2024.1376877
Fish Science
Published
Correlated environmental DNA and electrofished estimates of relative biomass for golden perch, Macquaria ambigua
Meaghan L. Rourke · Matt K. Broadhurst · Ashley M. Fowler · Julian M. Hughes · Joseph D. DiBattista · Elise M. Furlan
Frontiers in Fish Science
doi 10.3389/frish.2024.1358572
Fish Science
Published
Population genomic analysis of the greater amberjack (Seriola dumerili) in the Mediterranean and the Northeast Atlantic, based on SNPs, microsatellites, and mitochondrial DNA sequences
Aikaterini Katirtzoglou · Dimitris Tsaparis · Evangelos Kolios · Antonios Magoulas · Constantinos C. Mylonas · Ioannis Fakriadis · Tereza Manousaki · Costas S. Tsigenopoulos
Frontiers in Fish Science
doi 10.3389/frish.2024.1356313
RNA Research
Published
Identification of regulons modulating the transcriptional response to SARS-CoV-2 infection in humans
Mónica Padilla-Gálvez · Leo J. Arteaga-Vazquez · Ana B. Villaseñor-Altamirano · Yalbi Itzel Balderas-Martínez · Leonardo Collado-Torres · Javier De Las Rivas · Daniel Blanco-Melo · Alejandra Medina-Rivera
Frontiers in RNA Research
doi 10.3389/frnar.2024.1334873