Clinical value of combined SHOX2 and RASSF1A methylation in lung cancer diagnosis across tissue and liquid biopsy samples: a systematic review and meta-analysis
- Ting Wang1
- Jianguo Zhang2
- Jiayang Wang2
- Xiaoqun Dong3
- Qiushi Lin3
- Leiming Guo1
- Bo Zhang2
- Yue Cao2
- Yining Zhai2
- Mathhew Hadfield4
- Khan Hina5
- Abbas E. Abbas5
- Hong Ge1*corresponding author
- Liang Cheng6,7*corresponding author
- Hang Xing5*corresponding author
- Yifei Liu2*corresponding author
- 1Department of Radiation Oncology, The Affiliated Cancer Hospital of Zhengzhou University and Henan Cancer Hospital, Zhengzhou, Henan, China
- 2Department of Pathology, Affiliated Hospital of Nantong University, Nantong, Jiangsu, China
- 3Precision Health Program, Department of Radiology, College of Human Medicine, Michigan State University, East Lansing, MI, United States
- 4Division of Hematology and Oncology, Rhode Island Hospital, Warren Alpert Medical School of Brown University, Providence, RI, United States
- 5Division of Cardiothoracic Surgery, Rhode Island Hospital, Warren Alpert Medical School of Brown University, Providence, RI, United States
- 6Department of Pathology and Laboratory Medicine, Warren Alpert Medical School of Brown University, The Legorreta Cancer Center at Brown University, and Brown University Health, Providence, RI, United States
- 7Department of Surgery, Warren Alpert Medical School of Brown University, The Legorreta Cancer Center at Brown University, and Brown University Health, Providence, RI, United States
Abstract
Lung cancer remains the leading cause of cancer-related mortality worldwide, with poor prognosis in advanced stage diseases. Although early diagnosis has the potential to improve patient outcomes, current diagnostic methods remain suboptimal, highlighting the need for accurate molecular biomarkers. We systematically reviewed 49 studies to evaluate the diagnostic performance of SHOX2 methylation, RASSF1A methylation, and their combined panel for lung cancer detection. The combined SHOX2/RASSF1A methylation panel demonstrated a pooled sensitivity of 77.8% (95% CI: 72.3%–82.5%) and specificity of 89.0% (95% CI: 86.6%–91.1%), with an HSROC area under the curve (AUC) of 0.916. SHOX2 methylation alone yielded a sensitivity of 69.4% and specificity of 91.7%, whereas RASSF1A methylation showed lower sensitivity (45.7%) but the highest specificity (93.8%). Pairwise comparisons demonstrated that the combined panel significantly improved sensitivity compared with either SHOX2 or RASSF1A alone while maintaining specificity comparable to SHOX2, although lower than that of RASSF1A. Subgroup analyses showed that assay method and pathological subtype contributed to differences in pooled sensitivity, whereas leave-one-out sensitivity analyses confirmed the robustness of the pooled estimates. In conclusion, the combined SHOX2/RASSF1A methylation panel provides a more balanced diagnostic performance than either biomarker alone and represents a promising adjunctive approach for lung cancer detection. Future studies should focus on standardizing detection methods, integrating these biomarkers with other diagnostic modalities, and evaluating their diagnostic performance in early-stage lung cancer to further enhance their clinical utility.
Keywords
1 Introduction
Lung cancer remains the leading cause of cancer-related deaths worldwide, accounting for over two million new cases and 1.8 million deaths annually (1–3). Despite advancements in treatment strategies, including targeted therapies and immunotherapy, the prognosis for lung cancer, especially in advanced stages, remains dismal, with 5-year survival rates as low as 15% for stage III and 5% for stage IV disease (4–6). The two main types of lung cancer, non-small cell lung cancer (NSCLC) and small cell lung cancer (SCLC) differ in their biological behaviors and therapeutic responses, with NSCLC further classified into subtypes such as squamous cell carcinoma (SCC) and adenocarcinoma (AC) (7, 8).
Early detection of lung cancer is critical for improving survival outcomes, yet most cases are diagnosed at an advanced stage due to the lack of specific symptoms and the limitations of conventional diagnostic methods, such as imaging and invasive biopsies (9–12). In this context, minimally invasive diagnostic tools with higher sensitivity and specificity are urgently needed. Recent advances in the understanding of epigenetics have highlighted the role of DNA methylation as a promising biomarker for cancer detection (13, 14). DNA methylation plays a pivotal role in tumorigenesis, with cancer cells exhibiting either global hypomethylation or specific hypermethylation on promoter regions of tumor suppressor genes (15–17). Promoter hypermethylation is particularly relevant as it frequently silences genes critical for cell differentiation and fate, making it a promising target for biomarker development (18, 19).
To provide background on the development of DNA methylation biomarkers for lung cancer, we summarized 42 previously reported genes, including RASSF1A, SHOX2, CDKN2A, HOXA1, and others (Supplementary Material 1), which exhibit aberrant promoter methylation detectable in non-invasive samples such as blood, sputum, and pleural effusion, enabling non-invasive diagnostic approaches (20). Among the most studied methylation biomarkers, RASSF1A and SHOX2 genes have shown significant diagnostic potential (21). Hypermethylation of RASSF1A leads to silencing of its tumor-suppressive function, while SHOX2 methylation has been strongly associated with malignancy (22, 23).
Despite promising findings, the diagnostic efficacy of RASSF1A and SHOX2 methylation remains inconclusive, with reported sensitivity and specificity varying across studies. Therefore, a systematic synthesis of available evidence is needed to evaluate their diagnostic performance comprehensively. This study aims to conduct a systematic review and meta-analysis to assess the diagnostic accuracy of RASSF1A and SHOX2 methylation in lung cancer, focusing on key metrics such as sensitivity, specificity, and diagnostic odds ratio. By analyzing data from 47 studies, this meta-analysis seeks to clarify their utility as biomarkers and guide future research and clinical implementation.
2 Materials and methods
2.1 Search strategy
To identify relevant studies investigating the diagnostic efficacy of SHOX2, RASSF1A, and the combination of SHOX2 and RASSF1A methylation in lung cancer, a comprehensive and systematic search was conducted. The databases searched included the Cochrane Library, PubMed, Web of Science, and Embase, covering publications up to July 2026. Medical Subject Headings (MeSH) terms and free-text keywords related to lung cancer and DNA methylation were utilized, including terms such as “lung neoplasms,” “DNA methylation,” “SHOX2,” and “RASSF1A.” The search strategy was adapted to each database to ensure optimal coverage, focusing on peer-reviewed studies published in English.
2.2 Selection criteria
The study selection process adhered to predefined inclusion and exclusion criteria. Human studies employing case-control, cohort, or cross-sectional designs that evaluated the diagnostic performance of SHOX2 methylation, RASSF1A methylation, or their combined methylation panel for lung cancer were included. Eligible studies were required to include both patients with lung cancer and an appropriate control group, provide sufficient data to construct a 2 × 2 contingency table, and be published as original full-text articles.
Studies were excluded if they were conducted on animal models or in vitro systems, as these differ significantly in biology and pathology from human lung cancer. Reviews, conference abstracts, editorials, case reports, letters, comments, and non-English publications were also excluded. Studies involving duplicate or overlapping patient populations or those that did not evaluate the diagnostic performance of the biomarkers of interest were also excluded. The study selection process followed the PRISMA (Preferred Reporting Items for Systematic Reviews and Meta-Analyses) guidelines, and the detailed inclusion and exclusion process was summarized using a PRISMA flow diagram.
2.3 Data extraction
Eligibility of the identified studies was independently assessed by two reviewers based on the predefined inclusion and exclusion criteria. Discrepancies between the reviewers were resolved through discussion or consultation with a third reviewer. Data extraction was performed independently by three reviewers (T.W., JY.W., and H.X.) using a standardized data collection form. Extracted information included study characteristics, participant demographics, methodological details, and key outcome measures such as sensitivity, specificity, and other diagnostic performance metrics.
For each independent diagnostic dataset, the numbers of true positives (TP), false positives (FP), false negatives (FN), and true negatives (TN) were extracted directly from the original publication whenever available. When these values were not explicitly reported, they were derived from the reported sample sizes and diagnostic accuracy measures only when the corresponding 2 × 2 contingency table could be reconstructed uniquely. If the reported information permitted more than one possible combination of TP, FP, FN, and TN, the data were considered non-reconstructable and were not included in the quantitative synthesis.
Independent cohorts reported within the same publication were treated as separate diagnostic datasets. However, data derived from the same patient population were included only once within each biomarker analysis to avoid double-counting and violation of statistical independence. When multiple diagnostic results based on different sample types or assay methods were reported for the same patient population, only one dataset was retained according to a predefined sample-type hierarchy: tissue > bronchoalveolar lavage fluid > pleural effusion > bronchial aspirate > plasma > serum. This hierarchy prioritized specimens considered to provide a more direct representation of tumor-derived methylation signals.
2.4 Quality assessment
The methodological quality and risk of bias of the included studies were independently assessed by two reviewers using the Quality Assessment of Diagnostic Accuracy Studies-2 (QUADAS-2) tool. QUADAS-2 evaluates four key domains: patient selection, index test, reference standard, and flow and timing. Each domain was assessed for risk of bias, while the first three domains were additionally evaluated for concerns regarding applicability. Any discrepancies between the reviewers were resolved through discussion or consultation with a third reviewer. The results of the quality assessment were summarized using standard QUADAS-2 risk-of-bias and applicability judgments to evaluate the overall methodological quality of the included studies.
2.5 Meta-analysis
Diagnostic test accuracy meta-analysis was performed to evaluate the diagnostic performance of SHOX2 methylation, RASSF1A methylation, and the combined SHOX2/RASSF1A methylation panel for distinguishing patients with lung cancer from controls.
Pooled diagnostic accuracy was estimated using a bivariate random-effects model (Reitsma model), which jointly models sensitivity and specificity while accounting for their within-study correlation and between-study heterogeneity. Based on the fitted bivariate model, hierarchical summary receiver operating characteristic (HSROC) curves were generated to summarize the overall diagnostic performance of each biomarker panel. Summary estimates of sensitivity, specificity, positive likelihood ratio (PLR), negative likelihood ratio (NLR), diagnostic odds ratio (DOR), and the area under the HSROC curve (AUC) with corresponding 95% confidence intervals (CIs) were calculated.
Potential threshold effects were evaluated by calculating the Spearman correlation coefficient between the logit-transformed sensitivity and the logit-transformed false-positive rate (1 − specificity). A significant positive correlation was considered indicative of a threshold effect. Between-study heterogeneity was explored descriptively using Cochran’s Q and I2 statistics for sensitivity, specificity, PLR, NLR, and DOR to facilitate comparison with previous diagnostic meta-analyses, while the primary pooled estimates were obtained from the bivariate random-effects model. Prespecified subgroup analyses were conducted according to sample type, assay method, sample size, ethnicity, and pathological subtype to explore potential sources of heterogeneity. Publication bias was assessed using Deeks’ funnel plot asymmetry test, which is recommended for diagnostic accuracy meta-analyses. Leave-one-out sensitivity analyses were performed to evaluate the robustness of the pooled estimates.
2.6 Statistical analysis
All statistical analyses were performed using R (version 4.6.0; R Foundation for Statistical Computing, Vienna, Austria). Diagnostic test accuracy meta-analyses were conducted using the mada package. Pairwise differences in pooled sensitivity and specificity among the combined SHOX2/RASSF1A panel, SHOX2 alone, and RASSF1A alone were evaluated using Wald tests for the corresponding biomarker-group coefficients in the joint bivariate meta-regression model. All statistical tests were two-sided. A P value <0.05 was considered statistically significant.
3 Results
3.1 Publication search and included studies
The study selection process for this meta-analysis is summarized in a PRISMA flow chart (Figure 1). A total of 1117 studies were retrieved from PubMed, Web of Science, Cochrane Library, and Embase. After removing 377 duplicate records, 740 studies were screened. Of these, 452 were excluded based on titles and abstracts, leaving 288 studies for full-text review. Ultimately, 239 studies were excluded for the following reasons: 63 were of incorrect study types, 64 were not conducted on humans, 29 were conference abstracts, 23 lacked sufficient data for outcome calculation, 8 full texts articles were unavailable, and 52 were review articles. Forty-nine studies met the inclusion criteria and were included in this meta-analysis (24–45), (46–72). The QUADAS-2 assessment showed that most studies had a low risk of bias in the flow and timing domain, whereas the patient selection and reference standard domains were predominantly rated as unclear. The index test domain showed the highest proportion of high-risk assessments. Concerns regarding applicability were generally low across all domains. Detailed QUADAS-2 assessments are presented in Supplementary Material 2.

3.2 Characteristics of included studies
The detailed characteristics of the 49 included studies are presented in Table 1. These studies, published between 2004 and 2025, included various study designs, participant demographics, sample types, and methodologies. Most studies (45/49) used a case-control design, while four employed a cohort design. The number of cases ranged from 9 to 585, and the number of controls ranged from 9 to 445. Sample types included FFPE tissues, bronchoalveolar lavage fluid (BALF), pleural effusion, bronchial epithelial cells, blood, bronchial aspirates, lung tissues, bronchial washings, and sputum. Because some studies evaluated multiple specimen types, the summed frequencies across specimen types exceeded the total number of included studies.
TABLE 1. Summary of included study characteristics.
| Study ID | Country | Genes | Assay method | Study design | Cases | Controls | Cohort | Sample | Number of cases | Number of controls | Histology | Stage | Referencestandard |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Zhao (57) | China | SHOX2, RASSF1A | MSP | Case-control study | Retrospectively selected cases | Combination of benign diseases and AIS | Training | FFPE | 207 | 65 | AIS 31/238MIA 36/238IA 171/238 | T0 31/238IA 186/238IB 11/238II ∼ IV 10/238 | Histopathology |
| Chen (55) | China | SHOX2, RASSF1A | MSP | Case-control study | Retrospectively selected cases | Matched non-tumor lung tissue specimens | Training | Lung tissues | 25 | 25 | LUAD 25/50 | I 2250II 3/50 | Histopathology |
| Zeng (53) | China | SHOX2, RASSF1A | MSP | Case-control study | Retrospectively selected cases | Not described | Training | BALF | 57 | 20 | Not reported | Not reported | Histopathology |
| Gu (54) | China | SHOX2, RASSF1A | RT-PCR | Case-control study | Retrospectively selected cases | Combination of benign diseases | Training | Lung tissues | 65 | 29 | LUSC 19/94LUAD 28/94SCLC 8/94 | I/II 7/94III 19/94IV 39/94 | Histopathology |
| | | | | | | | Training | Lymph node | 62 | 17 | LUSC 7/79LUAD 39/79SCLC 10/79 | I/II 1/79III 18/79IV 43/79 | Histopathology |
| Ren (63) | China | SHOX2, RASSF1A | qPCR | Case-control study | Retrospectively selected cases | Combination of benign diseases and other cancers | Training | BALF | 123 | 130 | LUSC 17/123LUAD 82/123SCLC 8/123Others 16/123 | T0 4/123I 47/123II 13/123III 19/123IV 25/123Unknown 15/123 | Surgery specimen/histopathology |
| Zhong (56) | China | SHOX2, RASSF1A | MSP | Case-control study | Retrospectively selected cases | BPE, not further described | Training | PE | 68 | 110 | LUSC 9/68LUAD 51/68Others 8/68 | Not reported | Not described |
| Zhang (58) | China | SHOX2, RASSF1A | qPCR | Case-control study | Retrospectively selected cases | Combination of benign diseases | Training | PE | 45 | 45 | NSCLC 42/45SCLC 3/45 | Not reported | Pleural tissue biopsy/cytology |
| Zhang (59) | China | SHOX2, RASSF1A | QMSP | Case-control study | Retrospectively selected cases | Combination of benign diseases and AAH | Training | BALF | 585 | 101 | LUSC 162/585LUAD 181/585SCLC 135/585Others 107/585 | Not reported | Clinical diagnosis |
| Zhang (60) | China | SHOX2, RASSF1A | RT-PCR | Case-control study | Retrospectively selected cases | Combination of benign diseases and other cancers | Training | BALF | 284 | 38 | LUSC 107/284LUAD 92/284SCLC 42/284Others 43/284 | I 28/284II 30/284III 133/284IV 93/284 | Histopathology/cytology |
| Shi (62) | China | SHOX2, RASSF1A | QMSP | Case-control study | Retrospectively selected cases | Combination of benign diseases | Training | FFPE | 137 | 114 | LUSC 51/137LUAD 70/137SCLC 16/137 | I 57/137II 23/137III 30/137IV 27/137 | Histopathology |
| Lu (64) | China | SHOX2, RASSF1A | qPCR | Case-control study | Retrospectively selected cases | Combination of benign diseases | Training | BALF | 43 | 23 | LUSC 23/43LUAD 13/43SCLC 4/43Others 3/43 | I/II 11/43III/IV 29/43Unknown 3/43 | Histopathology |
| Liu (65) | China | SHOX2, RASSF1A | QMSP | Case-control study | Retrospectively selected cases | Combination of benign diseases | Training | BEC | 185 | 55 | LUSC 53/185LUAD 104/185SCLC 23/185Others 5/185 | I 28/185II 20/185III 40/185IV 97/185 | Not described |
| Liang (66) | China | SHOX2, RASSF1A | MSP | Cohort study | Prospectively selected cases | Non-cancer participants who underwent diagnostic work-up | Training | PE | 68 | 48 | LUSC 6/68LUAD 54/68SCLC 4/68Others 4/68 | Not reported | Histopathology/cytology |
| Jin (67) | China | SHOX2, RASSF1A | qPCR | Case-control study | Retrospectively selected cases | Non-cancer, not further described | Training | BALF | 36 | 19 | MIA 22/36IA 8/36 others 6/36 | Tis 4/36T1mi/T1a 23/36T1b 6/36T1c 3/36 | Not described |
| | | | | | | | | Plasma | 36 | 19 | MIA 22/36IA 8/36 others 6/36 | Tis 4/36T1mi/T1a 23/36T1b 6/36T1c 3/36 | |
| Gao (69) | China | SHOX2, RASSF1A | qPCR | Cohort study | Diagnostic work-up for LC | Non-cancer participants who underwent diagnostic work-up | Training | FFPE (tumer) | 54 | 31 | AIS 3/54MIA 10/54IA 41/54 | Tis 3/54IA 36/54IB 8/54II 7/5 | Histopathology |
| | | | | | | | | FFPE (tumer and paracancerous) | 54 | 31 | AIS 3/54MIA 10/54IA 41/54 | Tis 3/54IA 36/54IB 8/54II 7/54 | |
| Chen (70) | China | SHOX2, RASSF1A | qPCR | Case-control study | Retrospectively selected cases | Combination of benign diseases | Training | PE | 35 | 33 | LUSC 1/35LUAD 23/35SCLC 1/35Others 10/35 | Not reported | Histopathology/cytology |
| Xiang (68) | China | SHOX2, RASSF1A | MSP | Case-control study | Retrospectively selected cases | Combination of AIS and AAH | Training | FFPE | 133 | 125 | MIA 59/133IA 74/133 | Not reported | Histopathology |
| Xie (61) | China | SHOX2, RASSF1A | RT-PCR | Case-control study | Retrospectively selected cases | Combination of benign diseases | Training | BALF | 72 | 35 | LUSC 23/72LUAD 35/72SCLC 14/72 | I 22/72II 27/72III 13/72IV 10/72 | Histopathology |
| Xu (48) | China | SHOX2 | qPCR | Case-control study | Retrospectively selected cases | Unmatched healthy controls | Training | Blood | 302 | 153 | LUSC 28/302LUAD 236/302SCLC 32/302Others 6/302 | I 68/302II 62/302III 72/302IV 100/302 | Tumor tissue biopsy/histopathology |
| Vo (49) | Vietnam | SHOX2 | qPCR | Case-control study | Retrospectively selected cases | Combination of benign diseases | Training | FFPE | 120 | 94 | LUAD | III 52/120IV 59/120Unknown 9/120 | Not described |
| | | | | | | Unmatched healthy controls | | Plasma | 30 | 27 | Not reported | I 2/30II 8/30III 15/30IV 5/30 | Not described |
| Schmidt (50) | Germany,UK | SHOX2 | qPCR | Case-control study | Retrospectively selected cases | Non-cancer, not further described | Training | Bronchial aspirates | 281 | 242 | LUSC 103/281LUAD 109/281SCLC 29/281Others 40/281 | I 59/281II 43/281III 108/281IV 62/281Unknown 9/281 | Histopathology/cytology |
| Kneip (51) | Germany,USA | SHOX2 | qPCR | Case-control study | Retrospectively selected cases | Combination of healthy, benign diseases and other cancers | Testing | Plasma | 188 | 155 | LUSC 38/188LUAD 31/188SCLC 15/188Others 104/188 | I 37/188II 29/188III 53/188IV 42/188Unknown 27/188 | Not described |
| | | | | | | Unmatched healthy controls | Training | Plasma | 20 | 20 | Not reported | IV | |
| Huang (52) | China | SHOX2 | qPCR | Case-control study | Retrospectively selected cases | Combination of benign diseases | Training | Plasma | 104 | 36 | LUSC 15/104LUAD 53/104SCLC 3/104Others 33/104 | I 48/104II 15/104III 20/104IV 21/104 | Histopathology |
| | | | | | | | Validation | | 19 | 11 | LUSC 4/19LUAD 14/19Others 1/19 | I 12/19II 4/19III 3/19 | |
| Feng (71) | China | SHOX2 | MSP | Case-control study | Retrospectively selected cases | Combination of benign diseases | Training | Lung tissues | 89 | 9 | LUSC 34/89LUAD 47/89Others 8/89 | I/II 52/89III/IV 37/89 | Surgery specimen/histopathology |
| Dietrich (72) | UK | SHOX2 | qPCR | Case-control study | Retrospectively selected cases | Not described | Validation | BALF | 100 | 104 | LUSC 28/125LUAD 26/125SCLC 40/125Others 31/125 | Not reported | Histopathology/cytology |
| Yu (24) | China | RASSF1A | MSP | Case-control study | Retrospectively selected cases | Combination of healthy and benign diseases | Training | Serum | 75 | 50 | LUSC 26/75LUAD 40/75Others 9/75 | I 9/75II 18/75IIIa 15/75IIIb 13/75IV 2/75 | Not described |
| Shivapurkar (27) | USA | RASSF1A | qPCR | Case-control study | Retrospectively selected cases | Unmatched healthy controls | Training | Lung tissues | 40 | 40 | LUSC 18/40LUAD 22/40 | Not reported | Tumor tissue biopsy/histopathology |
| Smetannikova (26) | Russia | RASSF1A | GLAD-PCR | Case-control study | Retrospectively selected cases | Unmatched healthy controls | Training | Lung tissues | 40 | 25 | LUSC 19/40LUAD 13/40SCLC 2/40Others 6/40 | I 5/188II 12/40III 18/40IV 4/40Unknown 1/40 | Tumor tissue biopsy/histopathology |
| Shah (28) | India | RASSF1A | MSP | Case-control study | Prospectively selected cases | Matched on certain characteristics of healthy controls | Training | Blood | 100 | 100 | LUSC 28/100LUAD 72/100 | I/II 43/100III/IV 57/100 | Not described |
| Wang (25) | China | RASSF1A | MSP | Case-control study | Prospectively selected cases | Combination of healthy and benign diseases | Training | Blood | 80 | 50 | LUSC 26/80LUAD 40/80SCLC 5/80Others 9/80 | I/II 27/80III/IV 53/80 | Histopathology/cytology |
| Schmiemann (29) | Germany | RASSF1A | QMSP | Cohort study | Retrospectively selected cases | Non-cancer participants who underwent diagnostic work-up | Training | Bronchial aspirates | 85 | 102 | LUSC 16/85LUAD 33/85SCLC 17/85Others 19/80 | Not reported | Histopathology/cytology |
| Rykova (30) | Russia | RASSF1A | MSP | Case-control study | Retrospectively selected cases | Combination of benign diseases | Training | Plasma | 9 | 16 | Not reported | Not reported | Not described |
| Roncarati (31) | Italy | RASSF1A | dd-PCR | Cohort study | Diagnostic work-up for LC | Non-cancer participants who underwent diagnostic work-up | Training | BW | 91 | 31 | LUSC 32/91LUAD 41/91SCLC 11/91Others 7/91 | I 13/91II 7/91III 25/91IV 43/91Unknown 3/91 | Histopathology/cytology |
| Ponomaryova (32) | Russia | RASSF1A | MSP | Case-control study | Retrospectively selected cases | Matched on certain characteristics of healthy controls | Training | Blood | 60 | 32 | LUSC 40/60LUAD 20/60 | I/II 20/60III 40/60 | Histopathology |
| | | | | | | Matched on certain characteristics of healthy controls | | Blood | 60 | 32 | LUSC 40/60LUAD 20/60 | I/II 20/60III 40/60 | |
| Peng (33) | China | RASSF1A | MSP | Case-control study | Retrospectively selected cases | Combination of benign diseases | Training | Sputum | 82 | 25 | LUSC 38/82LUAD 27/82SCLC 7/82Others 10/82 | I 6/82II 18/82III 41/82IV 17/82 | Histopathology |
| Lewandoska (34) | Poland | RASSF1A | qPCR,MSP | Case-control study | Retrospectively selected cases | Surrounding normal lung tissues from the same cases | Training | Lung tissues | 59 | 59 | LUSC 34/59LUAD 20/59Others 5/59 | I 11/59II 21/59III 27/59 | Not described |
| Nunes (35) | Portugal | RASSF1A | QMSP | Case-control study | Retrospectively selected cases | Combination of benign diseases | Training | Plasma | 129 | 28 | LUSC 42/129LUAD 65/129SCLC 19/129Others 3/129 | I 15/129II 11/129III 27/129IV 46/129 | Histopathology/cytology |
| Nawaz (36) | China | RASSF1A | MMSP | Case-control study | Retrospectively selected cases | Combination of benign diseases | Training | Lung tissues | 70 | 24 | NSCLE | Not reported | Not described |
| Mohammed (37) | Iraq | RASSF1A | MSP | Case-control study | Retrospectively selected cases | Unmatched healthy controls | Training | Sputum | 84 | 42 | Not reported | I 11/84II 20/84III 35/84IV 18/84 | Histopathology/cytology |
| Ma (38) | China | RASSF1A | PCR | Case-control study | Retrospectively selected cases | Surrounding normal lung tissues from the same cases | Training | Lung tissues | 50 | 50 | LUSC 25/50LUAD 25/50 | I 25/50II 25/50 | Histopathology/cytology |
| | | | | | | Unmatched healthy controls | | Bronchial aspirates | 40 | 10 | LUSC 16/40LUAD 24/40 | I 23/40II 17/40 | |
| Liu (39) | China | RASSF1A | MSP | Case-control study | Retrospectively selected cases | Combination of healthy and benign diseases | Training | Plasma | 96 | 32 | Not reported | Not reported | Not described |
| | | | | | | | | Lung tissues | 96 | 32 | Not reported | Not reported | |
| Kim (40) | Korea | RASSF1A | MSP | Case-control study | Retrospectively selected cases | Non-cancer, not further described | Training | Lung tissues | 85 | 127 | LUSC 43/85LUAD 31/85Others 11/85 | I 52/85II 33/85 | Histopathology/cytology |
| | | | | | | | | BALF | 85 | 127 | LUSC 43/85LUAD 31/85Others 11/85 | I 52/85II 33/85 | |
| Hubers (41) | Netherlands | RASSF1A | MSP | Case-control study | Retrospectively selected cases | Combination of benign diseases | Training | Sputum | 98 | 90 | Not reported | Not reported | Histopathology/cytology |
| | | | | | | | Validation | | 60 | 445 | Not reported | Not reported | |
| Hubers (43) | Netherlands | RASSF1A | MSP | Case-control study | Prospectively selected cases | Non-cancer, not further described | Training | Sputum | 56 | 217 | LUSC 7/56LUAD 34/56SCLC 2/56Others 13/56 | I 36/56II 4/56III 6/56IV 10/56 | Histopathology/cytology |
| Hubers (44) | Netherlands | RASSF1A | MSP | Case-control study | Retrospectively selected cases | Combination of benign diseases | Learning | Sputum | 73 | 86 | LUSC 31/73LUAD 26/73SCLC 1/73Others 15/73 | I 14/73II 9/73III 24/73IV 25/73Unknown 1/73 | Histopathology/cytology |
| | | | | | | | Validation | | 159 | 154 | LUSC 50/159LUAD 66/159SCLC 6/159Others 37/159 | I 29/159II 17/159III 47/159IV 66/159 | |
| Grote (45) | Germany | RASSF1A | QMSP | Case-control study | Retrospectively selected cases | Combination of benign diseases | Training | Bronchial aspirates | 157 | 46 | LUSC 48/157LUAD 42/157SCLC 40/157Others 27/157 | Not reported | Histopathology/cytology |
| Gao (46) | China | RASSF1A | QMSP | Case-control study | Retrospectively selected cases | Combination of healthy and benign diseases | Training | Plasma | 58 | 54 | LUSC 23/58LUAD 18/58SCLC 2/58Others 15/58 | Not reported | Histopathology/cytology |
| | | | | | | | | Sputum | 40 | 36 | LUSC 13/40LUAD 13/40SCLC 2/40Others 12/40 | Not reported | |
| | | | | | | | | Lung tissues | 39 | 15 | LUSC 18/39LUAD 12/39SCLC 2/39Others 7/39 | Not reported | |
| Constâncio (47) | Portugal | RASSF1A | MSP | Case-control study | Retrospectively selected cases | Asymptomatic controls, not further described | Training | Plasma | 102 | 136 | LUSC 42/102LUAD 43/102SCLC 16/102Others 1/102 | I/II 17/102III/IV 85/102 | Histopathology/cytology |
| Hubers (42) | Netherlands | RASSF1A | QMSP | Case-control study | Prospectively selected cases | Combination of benign diseases | Training | Sputum1-3 | 53 | 47 | Not reported | Not reported | Histopathology/cytology |
| | | | | | | | | Sputum4-6 | 53 | 47 | Not reported | Not reported | |
| | | | | | | | | Sputum7-9 | 53 | 47 | Not reported | Not reported | |
3.3 Meta-analysis results of SHOX2 and RASSF1A methylation
The combined diagnostic performance of SHOX2 and RASSF1A methylation for lung cancer is shown in Figure 2. Based on 18 studies (53–70), the pooled sensitivity was 0.778 (0.723–0.825), the pooled specificity was 0.890 (0.866–0.911), the PLR was 7.102 (5.565–9.063), the NLR was 0.249 (0.196–0.318), the DOR was 28.483 (18.095–44.835), and the area under the HSROC curve was 0.916 (0.872–0.924). Forest plots of pooled sensitivity and specificity are presented in Figures 2A,B, respectively, while the HSROC curve is shown in Figure 2C. Spearman correlation analysis demonstrated no significant threshold effect among the included studies (Spearman’s ρ = −0.201, P = 0.382; Figure 2D), suggesting that heterogeneity was unlikely to be attributable to differences in diagnostic thresholds.

3.4 Meta-analysis results of SHOX2 methylation
The diagnostic performance of SHOX2 methylation was evaluated in 21 studies (48–52, 54, 55, 57–59, 61–69, 71, 72). The pooled sensitivity was 0.694 (0.630–0.752), the pooled specificity was 0.917 (0.900–0.931), the PLR was 8.363 (6.584–10.623), the NLR was 0.334 (0.271–0.411), the DOR was 25.071 (16.468–38.166), and the area under the HSROC curve was 0.925 (0.890–0.930). The corresponding forest plots and HSROC curve are presented in Figures 3A–C. No significant threshold effect was identified (Spearman’s ρ = −0.144, P = 0.502; Figure 3D).

3.5 Meta-analysis results of RASSF1A methylation
The diagnostic performance of RASSF1A methylation was evaluated in 38 studies (24–47, 54, 55, 57–59, 61–69). The pooled sensitivity was 0.457 (0.416–0.498), the pooled specificity was 0.938 (0.918–0.953), the PLR was 7.338 (5.624–9.573), the NLR was 0.579 (0.540–0.622), the DOR was 12.666 (9.474–16.934), and the area under the HSROC curve was 0.789 (0.721–0.868). Figures 4A–C presents the corresponding forest plots and HSROC curve. No significant threshold effect was observed (Spearman’s ρ = 0.138, P = 0.388; Figure 4D).

3.6 Pairwise comparison of diagnostic performance
Compared with SHOX2 alone, the combined SHOX2/RASSF1A assay showed higher sensitivity (P = 0.019), whereas specificity did not differ significantly (P = 0.272). Compared with RASSF1A alone, the combined assay showed higher sensitivity (P < 0.001) and lower specificity (P = 0.015). SHOX2 also showed higher sensitivity than RASSF1A (P < 0.001), while their specificities did not differ significantly (P = 0.183) (Table 2).
TABLE 2. Pairwise comparisons of diagnostic performance among biomarkers via bivariate meta-regression.
| Comparison | P value for sensitivity | P value for specificity |
|---|---|---|
| SHOX2&RASSF1A vs. SHOX2 | 0.019 | 0.272 |
| RASSF1A vs. SHOX2 | <0.001 | 0.183 |
| SHOX2&RASSF1A vs. RASSF1A | <0.001 | 0.015 |
3.7 Evaluation of heterogeneity and publication bias
Heterogeneity statistics are summarized in Supplementary Table S1. Significant heterogeneity was observed for pooled sensitivity in the combined SHOX2/RASSF1A, SHOX2, and RASSF1A analyses (all P < 0.001; I2 = 87.29%, 91.96%, and 83.32%, respectively). In contrast, specificity showed low heterogeneity for the combined SHOX2/RASSF1A (I2 = 26.98%, P = 0.063) and SHOX2 analyses (I2 = 19.14%, P = 0.312), whereas moderate heterogeneity was observed for RASSF1A (I2 = 66.69%, P < 0.001). Deeks’ funnel plot asymmetry test demonstrated significant publication bias for the combined SHOX2/RASSF1A, SHOX2, and RASSF1A analyses (all P < 0.001; Figures 5A–C).

3.8 Subgroup analysis
To further explore potential sources of between-study heterogeneity, prespecified subgroup analyses were performed according to ethnicity, sample type, sample size, assay method, and pathological subtype. For the combined SHOX2/RASSF1A analysis, no significant differences in pooled sensitivity or specificity were observed across sample types or sample size categories (all P > 0.05) (Table 3). However, pooled sensitivity differed significantly according to assay method (P = 0.005), with QMSP and RT-PCR showing higher sensitivities than MSP, whereas specificity did not differ significantly among assay methods (P = 0.730). Studies including multiple pathological subtypes also showed higher sensitivity than those restricted to a single subtype (P = 0.001), with a significant difference in specificity (P = 0.028). For SHOX2 (Table 4), pooled sensitivity varied significantly according to sample type (P = 0.001) and pathological subtype (P < 0.001), whereas no significant subgroup differences were observed for ethnicity, sample size, assay method, or specificity (all P > 0.05). For RASSF1A (Table 5), assay method significantly influenced pooled sensitivity (P = 0.043), while no significant subgroup differences were identified for ethnicity, sample type, sample size, pathological subtype, or specificity (all P > 0.05), although ethnicity showed a borderline association with sensitivity (P = 0.052).
TABLE 3. The sensitivity and specificity subgroup analyses of SHOX2 and RASSF1A: Sample types, sample size, assay methods, and pathological types.
| Parameter | Subgroup | No. of studies | Pooled sensitivity (95% CI) | P for subgroup difference | Pooled specificity (95% CI) | P for subgroup difference |
|---|---|---|---|---|---|---|
| Sample type | | | | | | |
| | Liquid | | | | | |
| | BALF | 7 | 0.76 (0.71, 0.80) | 0.237 | 0.89 (0.85, 0.92) | 0.386 |
| | PE | 4 | 0.75 (0.68–0.80) | | 0.91 (0.85–0.95) | |
| | BEC | 1 | 0.88 (0.82–0.92) | | 0.91 (0.80–0.96) | |
| | Plasma | 1 | 0.61 (0.45–0.75) | | 0.97 (0.70–1.00) | |
| | Tissue | | | | | |
| | FFPE | 4 | 0.73 (0.53–0.86) | | 0.88 (0.80–0.93) | |
| Sample size | | | | | | |
| | <100 | 7 | 0.76 (0.68, 0.83) | 0.823 | 0.88 (0.81, 0.93) | 0.981 |
| | ≥100 | 10 | 0.76 (0.69–0.82) | | 0.89 (0.85–0.91) | |
| Assay method | | | | | | |
| | MSP | 6 | 0.68 (0.59, 0.75) | 0.005 | 0.88 (0.82, 0.93) | 0.730 |
| | qPCR | 6 | 0.76 (0.68–0.83) | | 0.89 (0.85–0.93) | |
| | QMSP | 3 | 0.84 (0.72–0.92) | | 0.89 (0.85–0.92) | |
| | RT-PCR | 2 | 0.81 (0.77–0.85) | | 0.92 (0.68–0.99) | |
| Multifocality | | | | | | |
| | Solitary | 4 | 0.64 (0.54–0.73) | 0.001 | 0.90 (0.76–0.96) | 0.028 |
| | Multiple | 11 | 0.81 (0.75–0.85) | | 0.90 (0.87–0.92) | |
BALF, bronchoalveolar lavage fluid; PE, pleural effusion; BEC, bronchial epithelial cells; FFPE, formalin-fixed paraffin-embedded; MSP, Methylation-Specific Polymerase Chain Reaction; qPCR, Quantitative Polymerase Chain Reaction; QMSP, Quantitative Methylation-Specific Polymerase Chain Reaction; RT-PCR, Reverse Transcription Polymerase Chain Reaction.
Bold values indicate statistical significance (P < 0.05).
TABLE 4. The sensitivity and specificity subgroup analyses of SHOX2: Different races, sample types, sample size, assay methods, and pathological types.
| Parameter | Subgroup | No. of studies | Pooled sensitivity (95% CI) | P for subgroup difference | Pooled specificity (95% CI) | P for subgroup difference |
|---|---|---|---|---|---|---|
| Ethnicity | Asian | 19 | 0.68 (0.61, 0.75) | 0.832 | 0.91 (0.89, 0.93) | 0.526 |
| | White | 4 | 0.69 (0.60–0.77) | | 0.93 (0.87–0.97) | |
| Sample type | | | | | | |
| | Liquid | | | | | |
| | Blood | 1 | 0.66 (0.60–0.71) | 0.001 | 0.90 (0.84–0.94) | 0.186 |
| | Plasma | 6 | 0.63 (0.54–0.71) | | 0.92 (0.85–0.96) | |
| | BALF | 6 | 0.68 (0.62–0.74) | | 0.91 (0.88–0.94) | |
| | PE | 2 | 0.77 (0.31–0.96) | | 0.97 (0.90–0.99) | |
| | BA | 1 | 0.68 (0.62–0.73) | | 0.95 (0.91–0.97) | |
| | BEC | 1 | 0.78 (0.72–0.84) | | 0.95 (0.84–0.98) | |
| | Tissue | | | | | |
| | FFPE | 5 | 0.56 (0.41–0.70) | | 0.91 (0.87–0.93) | |
| | Lung tissues | 2 | 0.90 (0.80, 0.95) | | 0.96 (0.83, 0.99) | |
| Sample size | <100 | 12 | 0.74 (0.63, 0.82) | 0.096 | 0.94 (0.89, 0.96) | 0.313 |
| | ≥100 | 14 | 0.64 (0.58–0.70) | | 0.92 (0.90–0.93) | |
| Assay method | qPCR | 14 | 0.67 (0.62–0.72) | 0.390 | 0.92 (0.90–0.94) | 0.840 |
| | MSP | 4 | 0.63 (0.31–0.87) | | 0.92 (0.86–0.96) | |
| | QMSP | 3 | 0.74 (0.63–0.82) | | 0.92 (0.88–0.94) | |
| | RT-PCR | 2 | 0.79 (0.60, 0.90) | | 0.91 (0.71, 0.98) | |
| Tumor focality | Solitary | 5 | 0.50 (0.41–0.59) | <0.001 | 0.90 (0.87–0.93) | 0.791 |
| | Multiple | 15 | 0.72 (0.65–0.77) | | 0.92 (0.90–0.94) | |
| | Unknown | 2 | 0.80 (0.66–0.89) | | 0.94 (0.82–0.98) | |
BALF, bronchoalveolar lavage fluid; BA, Bronchial aspirates; PE, pleural effusion; BEC, bronchial epithelial cells; FFPE: formalin-fixed paraffin-embedded; qPCR, Quantitative Polymerase Chain Reaction; MSP, Methylation-Specific Polymerase Chain Reaction; QMSP, Quantitative Methylation-Specific Polymerase Chain Reaction; RT-PCR, Reverse Transcription Polymerase Chain Reaction.
Bold values indicate statistical significance (P < 0.05).
TABLE 5. The sensitivity and specificity subgroup analyses of RASSF1A: Different races, sample types, sample size, assay methods, and pathological types.
| Parameter | Subgroup | No. of studies | Pooled sensitivity (95% CI) | P for subgroup difference | Pooled specificity (95% CI) | P for subgroup difference |
|---|---|---|---|---|---|---|
| Ethnicity | | | | | | |
| | Asian | 23 | 0.48 (0.43, 0.53) | 0.052 | 0.95 (0.93, 0.97) | 0.213 |
| | White | 17 | 0.40 (0.34–0.46) | | 0.94 (0.90–0.97) | |
| Sample type | | | | | | |
| | Liquid | | | | | |
| | Serum | 1 | 0.31 (0.21–0.42) | 0.453 | 0.99 (0.86–1.00) | 0.071 |
| | Blood | 3 | 0.47 (0.28–0.66) | | 0.93 (0.49–0.99) | |
| | BALF | 6 | 0.45 (0.27–0.64) | | 0.94 (0.89–0.97) | |
| | BA | 3 | 0.49 (0.40–0.58) | | 0.98 (0.86–1.00) | |
| | Plasma | 6 | 0.33 (0.24–0.42) | | 0.97 (0.94–0.98) | |
| | BW | 1 | 0.46 (0.36–0.56) | | 0.98 (0.79–1.00) | |
| | Sputum | 9 | 0.42 (0.36–0.49) | | 0.93 (0.90–0.96) | |
| | PE | 2 | 0.54 (0.34–0.73) | | 0.98 (0.92–1.00) | |
| | BEC | 1 | 0.46 (0.39–0.53) | | 0.96 (0.87–0.99) | |
| | Tissue | | | | | |
| | Lung tissues | 10 | 0.47 (0.39, 0.56) | | 0.97 (0.94, 0.98) | |
| | FFPE | 4 | 0.48 (0.38–0.57) | | 0.93 (0.87–0.96) | |
| Sample size | | | | | | |
| | <100 | 13 | 0.51 (0.44, 0.57) | 0.077 | 0.94 (0.90–0.97) | 0.655 |
| | ≥100 | 29 | 0.43 (0.38–0.48) | | 0.95 (0.93–0.96) | |
| Assay method | | | | | | |
| | MSP | 18 | 0.42 (0.37–0.46) | 0.043 | 0.94 (0.90–0.96) | 0.270 |
| | qPCR | 7 | 0.42 (0.33–0.53) | | 0.96 (0.94–0.98) | |
| | GLAD-PCR | 1 | 0.55 (0.40–0.69) | | 0.96 (0.76–0.99) | |
| | QMSP | 8 | 0.45 (0.35–0.55) | | 0.96 (0.94–0.98) | |
| | ddPCR | 1 | 0.46 (0.36–0.56) | | 0.98 (0.79–1.00) | |
| | MMSP | 1 | 0.47 (0.36–0.59) | | 0.98 (0.75–1.00) | |
| | PCR | 1 | 0.64 (0.50–0.76) | | 0.99 (0.86–1.00) | |
| | RT-PCR | 2 | 0.69 (0.38, 0.90) | | 0.92 (0.53, 0.99) | |
| Multifocality | | | | 0.653 | | 0.621 |
| | Solitary | 4 | 0.43 (0.38–0.48) | | 0.91 (0.85, 0.95) | |
| | Multiple | 26 | 0.46 (0.40, 0.52) | | 0.96 (0.93, 0.97) | |
| | Unknown | 6 | 0.43 (0.37, 0.49) | | 0.94 (0.88, 0.97) | |
BALF, bronchoalveolar lavage fluid; BA, Bronchial aspirates; BW, bronchial washings; PE, pleural effusion; BEC, bronchial epithelial cells; FFPE, formalin-fixed paraffin-embedded; MSP, Methylation-Specific Polymerase Chain Reaction; qPCR, Quantitative Polymerase Chain Reaction; GLAD-PCR, Genomic Loci Allele Discrimination Polymerase Chain Reaction; QMSP, Quantitative Methylation-Specific Polymerase Chain Reaction; ddPCR, Droplet Digital PCR; MMSP, Multiplex methylation specific PCR; RT-PCR: PCR, Polymerase Chain Reaction; RT-PCR, Reverse Transcription Polymerase Chain Reaction.
Bold values indicate statistical significance (P < 0.05).
3.9 Leave-one-out sensitivity analysis
Leave-one-out sensitivity analyses were performed by sequentially excluding each study to evaluate the robustness of the pooled diagnostic estimates. For combined SHOX2/RASSF1A methylation, pooled sensitivity ranged from 0.766 to 0.787 and pooled specificity from 0.887 to 0.896 (Supplementary Table S2). For SHOX2 methylation, pooled sensitivity ranged from 0.678 to 0.706 and pooled specificity from 0.912 to 0.921 (Supplementary Table S3). For RASSF1A methylation, pooled sensitivity ranged from 0.447 to 0.463 and pooled specificity from 0.936 to 0.940 (Supplementary Table S4). Overall, only minimal changes in the pooled estimates were observed after sequential omission of individual studies, indicating that no single study had a substantial influence on the overall diagnostic performance and confirming the robustness of the findings.
4 Discussion
This systematic review and meta-analysis comprehensively evaluated the diagnostic performance of SHOX2 methylation, RASSF1A methylation, and their combined panel for lung cancer detection based on 49 eligible studies. The combined SHOX2/RASSF1A methylation panel demonstrated a pooled sensitivity of 0.778 (0.723–0.825) and specificity of 0.890 (0.866–0.911), with an HSROC AUC of 0.916, indicating excellent overall diagnostic performance. In comparison, SHOX2 methylation alone achieved higher sensitivity than RASSF1A methylation (0.694 vs. 0.457), whereas RASSF1A demonstrated the highest specificity (0.938). Pairwise comparisons further showed that the combined panel significantly improved sensitivity compared with either SHOX2 or RASSF1A alone while maintaining specificity comparable to SHOX2, although lower than that of RASSF1A. These findings suggest that combining SHOX2 and RASSF1A provides a more balanced diagnostic strategy than either individual biomarker and supports its potential role as an adjunctive biomarker for lung cancer detection.
DNA methylation is a stable epigenetic alteration that occurs early in tumorigenesis and can be detected in blood, sputum, and other body fluids (12). These properties make it an attractive biomarker for cancer detection. Our findings highlight the critical role of DNA methylation biomarkers, particularly SHOX2 and RASSF1A, in lung cancer diagnosis. SHOX2 and RASSF1A are well-established tumor suppressor genes implicated in the pathogenesis of various cancers, including lung cancer. SHOX2, located at chromosome 3q25.32, is a key regulator of organ development during embryogenesis and is frequently hypermethylated in lung cancer, resulting in gene silencing (22). Similarly, RASSF1A is a tumor suppressor gene commonly hypermethylated in lung, kidney, and other solid tumors, contributing to tumor initiation and progression (23). The combined methylation panel demonstrated improved diagnostic accuracy, highlighting the complementary diagnostic potential of SHOX2 and RASSF1A. The clinical implications of our findings are significant. SHOX2 and RASSF1A methylation has the potential to serve as a non-invasive diagnostic tool for lung cancer, particularly in patients where invasive biopsy procedures are not feasible or yield insufficient material. Moreover, its balanced sensitivity and specificity suggest that it can minimize false-positive diagnoses, reducing unnecessary follow-up procedures and anxiety for patients.
Our results align with earlier meta-analyses that reported the diagnostic value of SHOX2 methylation in lung cancer detection. Zhao et al. demonstrated a sensitivity of 70% and specificity of 96% for SHOX2 methylation, which is comparable to our findings. However, our study expands on these findings by incorporating RASSF1A methylation and exploring the combined diagnostic efficacy of both biomarkers. Interestingly, while SHOX2 demonstrated higher sensitivity, RASSF1A displayed superior specificity. The combination of these biomarkers achieved an optimal balance between sensitivity and specificity, making it more suitable for clinical applications where both parameters are critical. Unlike previous meta-analyses that evaluated individual methylation markers separately, the present study directly compared pooled sensitivity and specificity among combined SHOX2/RASSF1A, SHOX2 alone, and RASSF1A alone using a joint bivariate meta-regression framework.
The combined analysis of SHOX2 and RASSF1A methylation represents a promising molecular diagnostic approach for lung cancer and may have potential utility in the early detection setting. However, because most included studies evaluated patients across mixed disease stages and did not report stage-specific diagnostic accuracy, the present meta-analysis could not assess performance specifically in early-stage disease. Its non-invasive nature nevertheless supports further evaluation in high-risk populations, such as smokers and individuals with a family history of lung cancer, particularly as an adjunct to existing screening strategies. Additionally, the ability to detect methylation in various sample types, including blood and sputum, enhances its feasibility for widespread clinical implementation. Future efforts should focus on standardizing methylation detection methods to ensure reproducibility and reliability across laboratories. Moreover, integrating methylation biomarkers with imaging modalities or other molecular markers could further improve diagnostic accuracy and guide personalized treatment strategies.
Although numerous DNA methylation biomarkers have been reported for lung cancer diagnosis, only SHOX2, RASSF1A, and their combined panel were supported by a sufficient number of independent studies with extractable diagnostic accuracy data to permit robust quantitative synthesis. Therefore, the present meta-analysis focused on these biomarkers. Despite prespecified subgroup analyses, substantial residual heterogeneity remained. One potential contributor to the residual heterogeneity is the variability in control populations across studies, which ranged from healthy individuals to patients with benign pulmonary diseases, atypical adenomatous hyperplasia, benign pleural effusion, and other non-malignant conditions. Studies using only healthy controls may overestimate diagnostic specificity compared with those including patients with benign pulmonary diseases or other malignancies, which more closely resemble real-world clinical diagnostic settings. Because many studies used mixed control populations or reported insufficient clinical details, subgroup analyses according to control type were not feasible. In addition, variations in methylation assays, laboratory protocols, and positivity definitions across studies may also have contributed to residual heterogeneity, although no significant threshold effect was detected. Together, these factors should be considered when interpreting the pooled diagnostic performance of SHOX2 and RASSF1A methylation. Future studies should adopt standardized methylation assays and prespecified positivity thresholds to improve comparability across studies and reduce between-study heterogeneity.
Despite these encouraging findings, several limitations should be acknowledged. First, most included studies were retrospective case-control studies, which may have overestimated diagnostic accuracy because of spectrum and selection bias. Second, substantial between-study heterogeneity remained despite subgroup analyses, likely reflecting differences in specimen type, assay methodology, and study populations. Third, significant publication bias was detected by Deeks’ funnel plot asymmetry test, suggesting that the pooled diagnostic performance may have been overestimated and should therefore be interpreted with appropriate caution. Finally, because most included studies enrolled patients across mixed disease stages and histological subtypes, stage-specific and histology-specific diagnostic performance could not be reliably evaluated. Consequently, the present findings reflect the overall diagnostic performance of these biomarkers across heterogeneous lung cancer populations rather than their accuracy in specific clinical settings. Future large-scale prospective studies using standardized methylation assays and uniform reporting of stage- and histology-specific diagnostic outcomes are warranted. In addition, cost-effectiveness analyses will be important before these biomarkers can be routinely implemented in clinical practice.
5 Conclusion
In summary, compared with either biomarker alone, the combined SHOX2/RASSF1A methylation panel significantly improved pooled sensitivity while maintaining high diagnostic specificity, supporting a more balanced overall diagnostic performance for lung cancer detection. These findings support its potential role as an adjunctive diagnostic approach, particularly for non-tissue or minimally invasive specimens. Nevertheless, large-scale prospective studies using standardized assay protocols are warranted before routine clinical implementation. Further studies should also evaluate stage-specific diagnostic performance, particularly in patients with stage I/II lung cancer, to better define the role of SHOX2/RASSF1A methylation in early detection.
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Supplementary material
The Supplementary Material for this article can be found online at: https://www.frontiersin.org/articles/10.3389/or.2026.1876563/full#supplementary-material
Supplementary material Supplementary material at the source
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Footnotes
Edited by: Tancredi Didier Bazan Russo, University of Palermo, Italy
Reviewed by: Alka Singh, The University of Chicago, United States
Lu He, Nanjing Drum Tower Hospital, China
Footnotes
AUC, area under the curve; NSCLC, non-small cell lung cancer; SCLC, small cell lung cancer; SCC, squamous cell carcinoma; AC, adenocarcinoma; SHOX2 and RASSF1A, combination of SHOX2 and RASSF1A; MeSH, Medical Subject Headings; NOS, Newcastle-Ottawa Scale; TP, True Positives, TN, True Negatives, FP, False Positives, FN, False Negatives; PLR, positive likelihood ratio, NLR, negative likelihood ratio, DOR, diagnostic odds ratio; SROC, summary receiver operating characteristic; FFPE, formalin-fixed paraffin-embedded; BALF, bronchoalveolar lavage fluid; PE, pleural effusion; BEC, bronchial epithelial cells; BWs: bronchial washings.
Statements
- Conflict of interest
The author(s) declared that this work was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.
- Funding
The author(s) declared that financial support was received for this work and/or its publication. This work was supported by grants from the National Natural Science Foundation of China (No. 82273422 for YL), Nantong Basic Research Plan Project (No. MS2023067 for YL), Henan Provincial Co-constructed Project for Medical Science and Technology Research (No. 252300420576 for TW), and Jiangsu Provincial Research Hospital (No. YJXYY202204-YSB01 for YL).
- Data availability
The datasets presented in this study can be found in online repositories. The names of the repository/repositories and accession number(s) can be found in the article/Supplementary Material.
- Author contributions
TW: Data curation, Project administration, Supervision, Validation, Visualization, Writing – original draft, Writing – review and editing. JZ: Data curation, Project administration, Supervision, Writing – original draft. JW: Data curation, Methodology, Project administration, Supervision, Validation, Visualization, Writing – original draft, Writing – review and editing. XD: Project administration, Supervision, Writing – original draft, Data curation. QL: Data curation, Supervision, Writing – review and editing. LG: Data curation, Supervision, Writing – review and editing. BZ: Data curation, Supervision, Writing – review and editing. YC: Data curation, Supervision, Writing – review and editing. YZ: Data curation, Supervision, Writing – review and editing. MH: Supervision, Writing – review and editing. KH: Supervision, Writing – review and editing. AA: Supervision, Writing – review and editing. HG: Supervision, Conceptualization, Project administration, Writing – original draft. LC: Conceptualization, Project administration, Supervision, Validation, Writing – review and editing. HX: Conceptualization, Data curation, Methodology, Project administration, Supervision, Validation, Visualization, Writing – review and editing. YL: Conceptualization, Funding acquisition, Project administration, Supervision, Validation, Writing – review and editing.
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Citation
Wang, T., et al. (2026). Clinical value of combined SHOX2 and RASSF1A methylation in lung cancer diagnosis across tissue and liquid biopsy samples: a systematic review and meta-analysis. Oncology Reviews, Volume 20. https://doi.org/
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- 20 - 2026
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Copyright © 2026 Wang, Zhang, Wang, Dong, Lin, Guo, Zhang, Cao, Zhai, Hadfield, Hina, Abbas, Ge, Cheng, Xing and Liu.
License: https://creativecommons.org/licenses/by/4.0/
*Correspondence: Hong Ge; Liang Cheng; Hang Xing; Yifei Liu
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